PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT13744
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family E2F/DP
Protein Properties Length: 281aa    MW: 31683.9 Da    PI: 5.0291
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT13744genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.81.2e-252489171
   E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
              r e+sL+ lt+kf++ll+++e+gi++ln+va+ L    v  k+RRiYDi+NVLe+++l+ekk kn+irw+g
  EMT13744 24 RAEHSLGELTKKFISLLKQAEDGILDLNNVAEIL---VV--KKRRIYDITNVLEGIGLLEKKLKNRIRWRG 89
              6799******************************...88..9***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-272291IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.14E-162487IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.8E-302489IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-232689IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146606.51E-4299205No hitNo description
SuperFamilySSF1440748.63E-31100205No hitNo description
PfamPF164218.5E-30104203IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDCRPLYQML ARSPGTPLTP GSSRAEHSLG ELTKKFISLL KQAEDGILDL NNVAEILVVK  60
KRRIYDITNV LEGIGLLEKK LKNRIRWRGL DDSGANLDNE ISVLETELEN LKLQEKALDN  120
RISEMHEKVR ELTEEENNQR WLYLTEDDIK GLPCFQNETL IAIKAPHGTT LEVPDPDEAG  180
DYIQRRYTIV IRSTMGSIDL YLVSKFEENM EELVGVATPP RHANVAEPAS TDGFIATEAG  240
QSSRSKDKLP NIQHIHRTPD LNAQDFGGMA KITPEFHVRS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A4e-241490274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3724420.0AK372442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3002B23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581217.11e-139PREDICTED: transcription factor E2FA-like isoform X1
RefseqXP_010239888.11e-140PREDICTED: transcription factor E2FA-like isoform X2
SwissprotQ9FNY03e-90E2FA_ARATH; Transcription factor E2FA
TrEMBLN1QWA10.0N1QWA1_AEGTA; Putative Transcription factor E2F5
STRINGSi017108m1e-127(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.13e-85E2F transcription factor 3